We recommend creating a new
sequencing is compatible with, and tested on, Python 3.7, 3.8, and 3.9.
conda create -n <env-name> python=<3.7, 3.8, or 3.9> conda activate <env-name>
- Note for Windows users:
QuTip: Installation on MS Windows: The only supported installation configuration is using the Conda environment with Python 3.5+ and Visual Studio 2015.
Installing with pip
pip install sequencing
Installing from source
Alternatively, you can install
GitHub using the following commands:
git clone https://github.com/sequencing-dev/sequencing.git pip install -e .
Verifying the installation
To verify your installation by running the
sequencing test suite,
execute the following commands in a Python session:
>>> import sequencing.testing as st >>> st.run()
If you prefer, you can also run the
sequencing tests in a single line:
python -m sequencing.testing